I am afraid you have to eloborate.
the longer I think about your post he more ambiguous it gets
My idea was to essentially use the tileID as the primary information storage. So i set up a tile for every single piece of information (connections between objects for example but also IDs for texts on signs, books etc.). The color of the tiles is just for the user to easily identify connection between tiles.
Your posts reads as if the color is carrying the information. Do you use a color channel to transport information and the links are dependent on the color instead of the tileID?
edit: I'd like to keep my solution usable both in the 2d toolkit editor and the Tiled map editor unless an incompatible solution is vastly superior.
Oh btw, I am writing playmaker actions for the relevant functions. There aren't any official playmaker actions for the tileset functions, right? Are those planned for future toolkit releases? If so you can have mine when i am done and you just polish them for the official release. Or i can just post them in the forum. Or not at all. Whatever you prefer