A few problems I'm seeing for the new collection, Sprite Definitions doesn't have anything in it, size 0, the collections that work have all the sprite definitions in there.
The checkbox Valid Material Ids is unchecked when it should be checked, it indeed didn't have anything in the materials array
As far as the missing collections, I've deleted old ones but they all seem to be there except the new one I'm trying to create.
Thoughts?
With more tests, modifying a collection and putting the new data folder in the main project seems pretty shabby, caused a crash, then the texture was corrupted and unusable, finally got the changes in an existing collection to work by doing a few project restart, I think what did it is recopying the data folder when the main project was closed.